Vacancies 66923-PhD-candidate-Extracting-imaging-biomarkers-for-AMD-with-Deep-Learning
  • 36 hours a week
  • Temporary
  • 4 years
  • Scale 10A: max € 42220 gross per year at full employment (incl. vacation bonus and end of year payments)
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Job description

Age-related macular degeneration (AMD) is the leading cause of blindness in elderly, affecting more than 50 million Europeans. About 15% of patients progress to irreversible vision changes and ultimately go blind. Therapies to slow progression are becoming available, but clinicians are currently not able to foresee who will progress and will need swift action to save sight.

The goal of this project is to automatically extract reliable biomarkers from multimodal and longitudinal retinal images using deep learning that can predict AMD progression. How to effectively combine heterogeneous 2D and 3D data from different projections with deep learning architectures is a research question that will be addressed in this project, as well as the analysis of temporal evolution of the imaging data. We are also interested to investigate semi-supervised approaches because complete annotations are not always available for all images.

You will be part of a multidisciplinary team, consisting of machine learning and clinical researchers and will work closely with the Ophthalmology departments in RadboudUMC and ErasmusMC, as well as international groups and consortia.

Profile

We are looking for ambitious deep learning engineers, data scientists, or machine learning experts. You should be creative, enthusiastic and have an MSc/Ph.D. degree in Computer Science, Data Science, Physics, Engineering or Biomedical Sciences or similar, with a clear interest in deep learning, image analysis and medical applications. Good communication skills and expertise in software development, preferably in Python/C++, are essential. Experience with machine learning should be evident from the (online) courses you've followed, your publications, GitHub account, etc. Experience with medical image processing is a plus.

Organization

The Diagnostic Image Analysis Group (DIAG) is a research division of the Department of Radiology and Nuclear Medicine of the Radboud University Medical Center Nijmegen. Nijmegen is the oldest Dutch city with a rich history and one of the liveliest city centers in the Netherlands. Radboud University has over 17,000 students. Radboudumc is a leading academic center for medical science, education, and healthcare with over 8,500 staff and 3,000 students.

The focus of DIAG is the development and validation of novel methods in a broad range of medical imaging applications. Research topics include image analysis, image segmentation, machine learning, and the design of decision support systems. Application areas include neuro, breast, prostate, lung and retinal imaging and computational pathology. Key to the success of the group is close cooperation with clinicians. Currently, the group consists of around 50 researchers.

We offer excellent research facilities with large data storage facilities, a cluster of 100 high-end GPUs which can be scaled dynamically to include cloud servers, and support from a team of research software engineers, data analysts, and clinicians.

Radboudumc
Radboudumc strives to be a leading developer of sustainable, innovative and affordable healthcare to improve the health and wellbeing of people and society in the Netherlands and beyond. This is the core of our mission: To have a significant impact on healthcare. To get a better picture of what this entails, check out our strategy.

Read more about what it means to work at Radboudumc and how you can do your part.

Employment conditions

The PhD positions are for four years and have the standard salary and secondary conditions for PhD candidates in the Netherlands. The research should result in a PhD thesis. See also our page with general information about doing a PhD in our group. Read more about the Radboudumc employment conditions and what our International Office can do for you when moving to the Netherlands.

Comments and contact information

Additional information about the vacancy can be obtained from Dr. Clarisa Sánchez, associate professor. Use the Apply button to submit your application.

In your application include a motivation letter, your CV, list of grades and links to publications and your Master thesis or other work you’ve written in English.All applications will be processed immediately upon receipt until the position has been filled.

Recruitment agencies are asked not to respond to this job posting.

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