Deep learning Expertise and services
RTC Deep Learning can provide expert guidance and services for big data analysis and deep learning, specifically in the field of image analysis, but also on predictive analytics in general.
Areas of expertise:
- Medical image analysis
- Development of deep learning algorithms
- Docker and (cloud-based) GPU solutions
- Web-based image analysis and viewing applications
- Research software engineering
- Challenges in biomedical image analysis
- Reader studies for annotating data sets
For more information on projects visit: https://rtc.diagnijmegen.nl/.
Services & expertise
- Consultation regarding the use of deep learning for specific research questions
- Assistance with data preparation and annotation
- Development and training of deep learning algorithms for detection, classification and segmentation problems
- Development of web-based applications for data processing and viewing
- GPU computing solutions
- Courses on how to use SOL, deep learning, coding in Python, general courses for students for Radboud AI for Health, courses on programming skills for Radboudumc researchers and external clients
- Support MSc students and visiting researchers
- Designing, organizing and setting up challenges on grand-challenge.org
- Designing, organizing and setting up reader studies on grand-challenge.org
AI for Health
Our RTC coordinates the Radboud AI for Health initiative, where Radboud University and Radboudumc collaborate to create AI innovations in healthcare. We offer courses for professionals, MSc student projects and PhD projects. For more information on Radboud AI for Health, please visit: https://www.ai-for-health.nl/.
Hardware & Software
We develop and maintain grand-challenge.org, a website for hosting challenges in biomedical imaging, annotating data and making deep learning models accessible to clinicians.
By promoting researchers to share their data and deep learning models we contribute to reproducible science that leads to more valuable healthcare innovations.
Challenges in biomedical image analysis have proven successful in driving innovation in creating algorithms that gain researchers new insights and assist clinicians in their decision process.
The platform promotes clinical validation of algorithms by allowing clinicians to execute algorithms on their own data via a web interface.
For many applications, visualization of your algorithms results is crucial. For this purpose we developed Cirrus Core, a visualization software based on MevisLab that allows for 2D and 3D viewing of medical image data.
The results of your algorithms can easily be added as an overlay, e.g. segmentations of anatomical structures, providing a visual aid for researchers and clinicians to interpret their algorithms.
RTC Deep Learning has set up a high-performance deep learning infrastructure called SOL. SOL offers researches access to a centralized pool of high-power general purpose graphic processing units (GPUs). It is used to create state-of-the-art tools for detecting and classifying illnesses and quantify extent and identify possible treatment options for diseases.
The GPU cluster consists of 40 compute nodes that give access to a pool of 100 GPUs (mainly NVIDIA GTX1080Ti and RTX2080Ti cards), a dedicated 500 TB storage server for serving data to deep learning compute nodes using 20 GBit networking, and an advanced monitoring solution to monitor the activity and health of the cluster.